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crAssphage???

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onefluover View Drop Down
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    Posted: July 28 2014 at 8:36pm
Hey I didn't name it:


"Newly discovered virus lives in half the world's population"

http://www.foxnews.com/health/2014/07/28/newly-discovered-virus-lives-in-half-world-population/?intcmp=obnetwork


Do some scientists sit around break rooms drinking coffee making jokes in naming new scientific words? They absolutely do! And if you read about where this new virus was discovered you'll certainly wonder if it applied here.

To me this virus sounds like it may end up having big potential in a number of areas. This article is copyrighted so I only posted the heading and link.

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Post Options Post Options   Thanks (0) Thanks(0)   Quote CRS, DrPH Quote  Post ReplyReply Direct Link To This Post Posted: July 28 2014 at 9:28pm
Originally posted by onefluover onefluover wrote:

Hey I didn't name it:


"Newly discovered virus lives in half the world's population"

http://www.foxnews.com/health/2014/07/28/newly-discovered-virus-lives-in-half-world-population/?intcmp=obnetwork


Do some scientists sit around break rooms drinking coffee making jokes in naming new scientific words? They absolutely do! And if you read about where this new virus was discovered you'll certainly wonder if it applied here.

To me this virus sounds like it may end up having big potential in a number of areas. This article is copyrighted so I only posted the heading and link.


Bacteriaphage?  Really?  What garbage journalism.  Phages are an integral component of any bacterial ecosystem.   They are similar to human viruses, but they only infect bacteria, which actually makes them useful in certain applications. 


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Post Options Post Options   Thanks (0) Thanks(0)   Quote onefluover Quote  Post ReplyReply Direct Link To This Post Posted: July 28 2014 at 9:41pm
Which is something like what I commented on in an earlier post/thread about basically creating a virus that does good things like make us happy or... attack or feed off of other harmful viruses or even cancers or in this case bad bacteria. That's what Professor Kawaoka should be studying/experimenting with.


We Only Just Discovered This Super Common Virus That's Likely Inside You


Sarah Zhang
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Sarah Zhang
Filed to: VIRUSES
MICROBIOME
BACTERIA
DNA SEQUENCING
METAGENOME



Today, scientists report the discovery of an incredibly common new virus that lives inside human gut bacteria. It's called crAssphage (more on the name later!), and it's about six times more abundant than all other known bacterial viruses put together. How did we miss it for so long?

The oversight might seem especially strange considering how intensely our the gut microbiome have been scrutinized lately. While most of that attention has focused on bacteria, the microbiome actually includes viruses—and fungi—too. The viruses most familiar to us are the ones that make us sick–flu, herpes, chicken pox—but crAssphage and other viruses living in our guts actually attack bacteria, not humans. They're called bacteriophages, or just phages, for short.

The reason we didn't find crAssphage is because we didn't know to look for it. Let's go through the chicken-and-the-egg problem here.

While new sequencing technologies have gotten way faster and cheaper, they still have a weakness: they're great for finding things we already know to look for, but they're lousy at finding new organisms. When researchers analyze a stool sample, they get a soup of all the DNA fragments from the sample—bacterial, viral, and human alike. Then there's the computationally intensive task of assembling those fragments into sequences we can identify. If particular bacteria has a particular string of genetic, then hey, we've found that bacteria in the sample.


The problem is that if we don't already know the sequence of an unknown virus, we can't find it with this technique. In fact, Bas Dutilh, an author of this new crAssphage study, says something like 75 percent of the DNA sequences in a new stool sample are unknown. Science journalist Ed Yong does an excellent job of explaining how Dutilh got around the problem:

Dutilh's team found it by using a different approach based on a simple idea: that fragments which repeatedly turn up in the same samples are more likely to be parts of the same genome. They used a technique called cross-assembly to identify one such group of co-occurring sequences, in stool samples from 12 people. They then assembled these sequences into a single genome.
So there you have it: crAssphage, so named for the cross-assembly technique that led to its discovery. Dutilh's team did a bit more work to verify that crAssphage specifically lived off of Bacteroides, a common group of bacteria in our guts.

In all, the team found crAssphage in the 75% of the gut sequences they studied from people in the U.S., Europe, and South Korea. We're still not sure exactly what phages in our gut do, but they definitely play a role in the gut microbial ecosystem. A study last year suggested phages help keep invading bacteria in check.

For now, I'll just leave you with an incredible number: scientists estimate there are 100 times more viral particles than human cells in your body. So there's still a lot to learn about what we really are. [Nature Communications via Not Exactly Rocket Science]

Top image: bacteriophages around a bacterial cell. GrahamColm/Wikipedia Commons


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Post Options Post Options   Thanks (0) Thanks(0)   Quote onefluover Quote  Post ReplyReply Direct Link To This Post Posted: July 28 2014 at 10:11pm
This gives me a better understanding:


In the Soviet Union, western antibiotics couldn't make it past the Iron Curtain. So Eastern Bloc doctors figured out how to use viruses to kill infectious bacteria. Now, with antibiotic-resistant bugs vexing doctors, that eerie yet effective method might come our way. In post-antibiotic world, infection cures you!

The technique actually dates back thousands of years, in a very rudimentary form: people observed that the water from certain rivers could cure infectious diseases like leprosy and cholera. In the early 20th century, scientists figured out that these waters contained very specific types of viruses, which killed the bacteria that caused the infections. No bacteria, no infection.

You already know this from high school biology (of course), but a virus works by injecting its DNA into a living cell, hijacking the cell's replication machinery to make more viruses. When the cell can't hold all those replicated viruses any more, it explodes, releasing the baby viruses to continue the cycle again—and of course, killing the cell.

Bacteriophages are a type of virus that targets, you guessed it, bacterial cells. Starting in the 1920s, scientists in both the U.S. and Georgia (the country, not the Peach State) began purifying bacteriophages and using them to treat bacterial infections. But right around WWII, western medicine latched on to the miraculous power of antibiotics, leaving the Soviet Union to perfect what's now called "phage therapy."

(Tip: pronounce "phage" to rhyme with "rage." Or rhyme it with "lodge" if you're fancy.)

Fast forward to today. Western medicine's (over)reliance on antibiotics has led to the evolution of new superbugs that can resist even our most powerful bacteria killers. And as Nature reports, that's got researchers looking into phage therapy:

In March, the US National Institute of Allergy and Infectious Diseases listed phage therapy as one of seven prongs in its plan to combat antibiotic resistance. And at the American Society for Microbiology (ASM) meeting in Boston last month, Grégory Resch of the University of Lausanne in Switzerland presented plans for Phagoburn: the first large, multi-centre clinical trial of phage therapy for human infections, funded by the European Commission.
And there are some serious benefits to phage therapy. While antibiotics work indiscriminately, killing both the disease causing bacteria and the healthy, necessary bacterial bystanders, each type of phage is precisely targeted to one very specific type of bacteria.

The downside is, if a doctor doesn't know exactly which species of bacteria is infecting a patient, he or she must create a cocktail of many different types of phages to ensure effectiveness. But compare that to traditional antibiotics, which can wipe out all of the healthy, normal bacteria in a patient's gut and leave an open playing field for the really nasty, antibiotic-resistant bacteria that are usually crowded out by the benign bugs. That can lead to some vicious, sometimes life-threatening complications when the bad bugs take over.

"Antibiotics are a big hammer," microbiologist Michael Schmidt of the Medical University of South Carolina in Charleston told Nature. "You want a guided missile." And phage therapy could be just that type of weapon.

And with a near-limitless supply of different phages (no two identical phages have ever been identified), bacterial resistance isn't such a problem: if a bug develops resistance to one type of phage, researchers can just add different phages to the cocktail.

There are, of course, drawbacks. Isolating, purifying, and storing phages is a much more finicky and time-consuming process than producing traditional antibiotics. And then there's the most practical of concerns: money. Since phages occur naturally, and their therapeutic use is nearly a century old, it would be incredibly difficult for a drug company to patent a phage therapy cocktail as intellectual property.

Indeed, the U.S. Supreme Court ruled last year that naturally-occurring genes cannot be patented, a law which would likely extend to phages. Like it or not, pharmaceutical companies are unlikely to invest in a therapy when they cannot ensure they'll make that money back with a patent-protected product that can't be copied by the competition.

Still, there is hope that phage therapy—which is still widely used in Russia, Poland, and Georgia—could make its way west. Nature reports that the European Union has kicked in $5.2 million into the research on Phagoburn, which will begin limited human trials in burn victims starting in September.

Who knows? Maybe someday, your doctor will cure you by infecting the thing that's infecting you—with a virus that comes from Russia with love.

http://gizmodo.com/soviet-doctors-cured-infections-with-viruses-and-soon-1587311881

"And then there were none."
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